Cormotif

DOI: 10.18129/B9.bioc.Cormotif    

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see Cormotif.

Correlation Motif Fit

Bioconductor version: 3.14

It fits correlation motif model to multiple studies to detect study specific differential expression patterns.

Author: Hongkai Ji, Yingying Wei

Maintainer: Yingying Wei <ywei at jhsph.edu>

Installation

To install this package, start R (version "4.1") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Cormotif")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Cormotif")

 

PDF	R Script	Cormotif Vignette
PDF		Reference Manual

Details

biocViews	DifferentialExpression, Microarray, Software
Version	1.40.0
In Bioconductor since	BioC 2.9 (R-2.14) (10.5 years)
License	GPL-2
Depends	R (>= 2.12.0), affy, limma
Imports	affy, graphics, grDevices
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	Cormotif_1.40.0.tar.gz
Windows Binary	Cormotif_1.40.0.zip
macOS 10.13 (High Sierra)	Cormotif_1.40.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/Cormotif
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/Cormotif
Package Short Url	https://bioconductor.org/packages/Cormotif/
Package Downloads Report	Download Stats