MSGFgui

DOI: 10.18129/B9.bioc.MSGFgui    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.14 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see MSGFgui.

A shiny GUI for MSGFplus

Bioconductor version: 3.14

This package makes it possible to perform analyses using the MSGFplus package in a GUI environment. Furthermore it enables the user to investigate the results using interactive plots, summary statistics and filtering. Lastly it exposes the current results to another R session so the user can seamlessly integrate the gui into other workflows.

Author: Thomas Lin Pedersen

Maintainer: Thomas Lin Pedersen <thomasp85 at gmail.com>

Installation

To install this package, start R (version "4.1") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MSGFgui")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MSGFgui")

 

HTML	R Script	Using MSGFgui
PDF		Reference Manual
Text		NEWS

Details

biocViews	GUI, ImmunoOncology, MassSpectrometry, Proteomics, Software, Visualization
Version	1.28.0
In Bioconductor since	BioC 3.0 (R-3.1) (7.5 years)
License	GPL (>= 2)
Depends	mzR, xlsx
Imports	shiny, mzID(>= 1.2), MSGFplus, shinyFiles (>= 0.4.0), tools
LinkingTo
Suggests	knitr, testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MSGFgui_1.28.0.tar.gz
Windows Binary	MSGFgui_1.28.0.zip (32- & 64-bit)
macOS 10.13 (High Sierra)	MSGFgui_1.28.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/MSGFgui
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MSGFgui
Package Short Url	https://bioconductor.org/packages/MSGFgui/
Package Downloads Report	Download Stats