ResidualMatrix

DOI: 10.18129/B9.bioc.ResidualMatrix    

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see ResidualMatrix.

Creating a DelayedMatrix of Regression Residuals

Bioconductor version: 3.14

Provides delayed computation of a matrix of residuals after fitting a linear model to each column of an input matrix. Also supports partial computation of residuals where selected factors are to be preserved in the output matrix. Implements a number of efficient methods for operating on the delayed matrix of residuals, most notably matrix multiplication and calculation of row/column sums or means.

Author: Aaron Lun [aut, cre, cph]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Installation

To install this package, start R (version "4.1") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ResidualMatrix")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ResidualMatrix")

 

HTML	R Script	Using the ResidualMatrix
PDF		Reference Manual
Text		NEWS

Details

biocViews	BatchEffect, DataRepresentation, ExperimentalDesign, Regression, Software
Version	1.4.0
In Bioconductor since	BioC 3.12 (R-4.0) (1.5 years)
License	GPL-3
Depends
Imports	methods, Matrix, S4Vectors, DelayedArray
LinkingTo
Suggests	testthat, BiocStyle, knitr, rmarkdown, BiocSingular
SystemRequirements
Enhances
URL	https://github.com/LTLA/ResidualMatrix
BugReports	https://github.com/LTLA/ResidualMatrix/issues
Depends On Me
Imports Me	batchelor
Suggests Me	BiocSingular, scran
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ResidualMatrix_1.4.0.tar.gz
Windows Binary	ResidualMatrix_1.4.0.zip
macOS 10.13 (High Sierra)	ResidualMatrix_1.4.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ResidualMatrix
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ResidualMatrix
Package Short Url	https://bioconductor.org/packages/ResidualMatrix/
Package Downloads Report	Download Stats