dStruct

DOI: 10.18129/B9.bioc.dStruct    

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see dStruct.

Identifying differentially reactive regions from RNA structurome profiling data

Bioconductor version: 3.14

dStruct identifies differentially reactive regions from RNA structurome profiling data. dStruct is compatible with a broad range of structurome profiling technologies, e.g., SHAPE-MaP, DMS-MaPseq, Structure-Seq, SHAPE-Seq, etc. See Choudhary et al, Genome Biology, 2019 for the underlying method.

Author: Krishna Choudhary [aut, cre] , Sharon Aviran [aut]

Maintainer: Krishna Choudhary <kchoudhary at ucdavis.edu>

Installation

To install this package, start R (version "4.1") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("dStruct")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("dStruct")

 

HTML	R Script	Differential RNA structurome analysis using `dStruct`
PDF		Reference Manual
Text		NEWS

Details

biocViews	Sequencing, Software, StatisticalMethod, StructuralPrediction
Version	1.0.0
In Bioconductor since	BioC 3.14 (R-4.1) (< 6 months)
License	GPL (>= 2)
Depends	R (>= 4.1)
Imports	zoo, ggplot2, purrr, reshape2, parallel, IRanges, S4Vectors, rlang, grDevices, stats, utils
LinkingTo
Suggests	BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0)
SystemRequirements
Enhances
URL	https://github.com/dataMaster-Kris/dStruct
BugReports	https://github.com/dataMaster-Kris/dStruct/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	dStruct_1.0.0.tar.gz
Windows Binary	dStruct_1.0.0.zip
macOS 10.13 (High Sierra)	dStruct_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/dStruct
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/dStruct
Package Short Url	https://bioconductor.org/packages/dStruct/
Package Downloads Report	Download Stats