epivizrStandalone

DOI: 10.18129/B9.bioc.epivizrStandalone    

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see epivizrStandalone.

Run Epiviz Interactive Genomic Data Visualization App within R

Bioconductor version: 3.14

This package imports the epiviz visualization JavaScript app for genomic data interactive visualization. The 'epivizrServer' package is used to provide a web server running completely within R. This standalone version allows to browse arbitrary genomes through genome annotations provided by Bioconductor packages.

Author: Hector Corrada Bravo, Jayaram Kancherla

Maintainer: Hector Corrada Bravo <hcorrada at gmail.com>

Installation

To install this package, start R (version "4.1") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("epivizrStandalone")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("epivizrStandalone")

 

HTML		Introduction to epivizrStandalone
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	GUI, Infrastructure, Software, Visualization
Version	1.22.0
In Bioconductor since	BioC 3.3 (R-3.3) (6 years)
License	MIT + file LICENSE
Depends	R (>= 3.2.3), epivizr(>= 2.3.6), methods
Imports	git2r, epivizrServer, GenomeInfoDb, BiocGenerics, GenomicFeatures, S4Vectors
LinkingTo
Suggests	testthat, knitr, rmarkdown, OrganismDbi(>= 1.13.9), Mus.musculus, Biobase, BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me	metavizr
Suggests Me	scTreeViz
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	epivizrStandalone_1.22.0.tar.gz
Windows Binary	epivizrStandalone_1.22.0.zip
macOS 10.13 (High Sierra)	epivizrStandalone_1.22.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/epivizrStandalone
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/epivizrStandalone
Package Short Url	https://bioconductor.org/packages/epivizrStandalone/
Package Downloads Report	Download Stats