intansv

DOI: 10.18129/B9.bioc.intansv    

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see intansv.

Integrative analysis of structural variations

Bioconductor version: 3.14

This package provides efficient tools to read and integrate structural variations predicted by popular softwares. Annotation and visulation of structural variations are also implemented in the package.

Author: Wen Yao <ywhzau at gmail.com>

Maintainer: Wen Yao <ywhzau at gmail.com>

Installation

To install this package, start R (version "4.1") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("intansv")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("intansv")

 

PDF	R Script	An Introduction to intansv
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	Annotation, Genetics, Sequencing, Software
Version	1.34.0
In Bioconductor since	BioC 2.13 (R-3.0) (8.5 years)
License	MIT + file LICENSE
Depends	R (>= 2.14.0), plyr, ggbio, GenomicRanges
Imports	BiocGenerics, IRanges
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	intansv_1.34.0.tar.gz
Windows Binary	intansv_1.34.0.zip
macOS 10.13 (High Sierra)	intansv_1.34.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/intansv
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/intansv
Package Short Url	https://bioconductor.org/packages/intansv/
Package Downloads Report	Download Stats