miRBaseConverter

DOI: 10.18129/B9.bioc.miRBaseConverter    

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see miRBaseConverter.

A comprehensive and high-efficiency tool for converting and retrieving the information of miRNAs in different miRBase versions

Bioconductor version: 3.14

A comprehensive tool for converting and retrieving the miRNA Name, Accession, Sequence, Version, History and Family information in different miRBase versions. It can process a huge number of miRNAs in a short time without other depends.

Author: Taosheng Xu<taosheng.x at gmail.com>, Thuc Le<Thuc.Le at unisa.edu.au>

Maintainer: Taosheng Xu<taosheng.x at gmail.com>

Installation

To install this package, start R (version "4.1") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("miRBaseConverter")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("miRBaseConverter")

 

HTML	R Script	miRBaseConverter: A comprehensive and high-efficiency tool for converting and retrieving the information of miRNAs in different miRBase versions
PDF		Reference Manual
Text		NEWS

Details

biocViews	Software, miRNA
Version	1.18.0
In Bioconductor since	BioC 3.6 (R-3.4) (4.5 years)
License	GPL (>= 2)
Depends	R (>= 3.4)
Imports	stats
LinkingTo
Suggests	BiocGenerics, RUnit, knitr, rtracklayer, utils, rmarkdown
SystemRequirements
Enhances
URL	https://github.com/taoshengxu/miRBaseConverter
BugReports	https://github.com/taoshengxu/miRBaseConverter/issues
Depends On Me
Imports Me	ExpHunterSuite
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	miRBaseConverter_1.18.0.tar.gz
Windows Binary	miRBaseConverter_1.18.0.zip
macOS 10.13 (High Sierra)	miRBaseConverter_1.18.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/miRBaseConverter
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/miRBaseConverter
Package Short Url	https://bioconductor.org/packages/miRBaseConverter/
Package Downloads Report	Download Stats