This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see xcms.
Bioconductor version: 3.14
Framework for processing and visualization of chromatographically separated and single-spectra mass spectral data. Imports from AIA/ANDI NetCDF, mzXML, mzData and mzML files. Preprocesses data for high-throughput, untargeted analyte profiling.
Author: Colin A. Smith [ctb], Ralf Tautenhahn [ctb], Steffen Neumann [aut, cre] , Paul Benton [ctb], Christopher Conley [ctb], Johannes Rainer [ctb] , Michael Witting [ctb], William Kumler [ctb]
Maintainer: Steffen Neumann <sneumann at ipb-halle.de>
Citation (from within R,
enter citation("xcms")
):
To install this package, start R (version "4.1") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("xcms")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("xcms")
HTML | R Script | Grouping FTICR-MS data with xcms |
HTML | R Script | LC-MS feature grouping |
HTML | R Script | LC-MS/MS data analysis with xcms |
HTML | R Script | LCMS data preprocessing and analysis with xcms |
Reference Manual | ||
Text | NEWS | |
Text | LICENSE |
Follow Installation instructions to use this package in your R session.
Source Package | xcms_3.16.1.tar.gz |
Windows Binary | xcms_3.16.1.zip |
macOS 10.13 (High Sierra) | xcms_3.16.1.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/xcms |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/xcms |
Package Short Url | https://bioconductor.org/packages/xcms/ |
Package Downloads Report | Download Stats |
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