AHLRBaseDbs

DOI: 10.18129/B9.bioc.AHLRBaseDbs    

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see AHLRBaseDbs.

LRBaseDbs for AnnotationHub

Bioconductor version: 3.14

Supplies AnnotationHub with `LRbaseDb` Ligand-Receptor annotation databases for many species. All the SQLite files are generated by our Snakemake workflow [lrbase-workflow](https://github.com/rikenbit/lrbase-workflow). For the details, see the README.md of lrbase-workflow.

Author: Koki Tsuyuzaki [aut, cre], Manabu Ishii [aut], Itoshi Nikaido [aut]

Maintainer: Koki Tsuyuzaki <k.t.the-answer at hotmail.co.jp>

Installation

To install this package, start R (version "4.1") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("AHLRBaseDbs")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AHLRBaseDbs")

 

HTML	R Script	Provide LRBaseDb databases for AnnotationHub
PDF		Reference Manual
Text		NEWS

Details

biocViews	AnnotationData, AnnotationHub, FunctionalAnnotation, LRBaseDb
Version	1.2.0
License	Artistic-2.0
Depends	R (>= 4.1.0)
Imports	AnnotationHub(>= 2.22.0)
LinkingTo
Suggests	BiocStyle, knitr, rmarkdown
SystemRequirements
Enhances
URL
BugReports	https://github.com/rikenbit/AHLRBaseDbs/issues
Depends On Me
Imports Me
Suggests Me
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	AHLRBaseDbs_1.2.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Package Short Url	https://bioconductor.org/packages/AHLRBaseDbs/
Package Downloads Report	Download Stats