metaboliteIDmapping

DOI: 10.18129/B9.bioc.metaboliteIDmapping    

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see metaboliteIDmapping.

Mapping of Metabolite IDs from Different Sources

Bioconductor version: 3.14

The package provides a comprehensive mapping table of nine different Metabolite ID formats and their common name. The data has been collected and merged from four publicly available source, including HMDB, Comptox Dashboard, ChEBI, and the graphite Bioconductor R package.

Author: Sebastian Canzler [aut, cre]

Maintainer: Sebastian Canzler <sebastian.canzler at ufz.de>

Installation

To install this package, start R (version "4.1") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("metaboliteIDmapping")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("metaboliteIDmapping")

 

HTML	R Script	metaboliteIDmapping
PDF		Reference Manual
Text		NEWS

Details

biocViews	AnnotationData, AnnotationHub, CustomDBSchema, FunctionalAnnotation
Version	1.0.0
License	GPL-3
Depends	R (>= 4.0.0)
Imports	AnnotationHub
LinkingTo
Suggests	magrittr, graphite, dplyr, tidyr, tibble, rappdirs, XML, readxl, stringr, utils, knitr, sets, R.utils, readr, conflicted, rmarkdown
SystemRequirements
Enhances
URL	https://github.com/yigbt/metaboliteIDmapping
Depends On Me
Imports Me
Suggests Me	multiGSEA
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	metaboliteIDmapping_1.0.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Package Short Url	https://bioconductor.org/packages/metaboliteIDmapping/
Package Downloads Report	Download Stats