HD2013SGI

DOI: 10.18129/B9.bioc.HD2013SGI    

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see HD2013SGI.

Mapping genetic interactions in human cancer cells with RNAi and multiparametric phenotyping

Bioconductor version: 3.14

This package contains the experimental data and a complete executable transcript (vignette) of the analysis of the HCT116 genetic interaction matrix presented in the paper "Mapping genetic interactions in human cancer cells with RNAi and multiparametric phenotyping" by C. Laufer, B. Fischer, M. Billmann, W. Huber, M. Boutros; Nature Methods (2013) 10:427-31. doi: 10.1038/nmeth.2436.

Author: Bernd Fischer

Maintainer: Mike Smith <mike.smith at embl.de>

Installation

To install this package, start R (version "4.1") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("HD2013SGI")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HD2013SGI")

 

PDF	R Script	HD2013SGI
PDF		Reference Manual

Details

biocViews	CancerData, CellCulture, ColonCancerData, ExperimentData, HighThroughputImagingData, Homo_sapiens_Data, MicrotitrePlateAssayData
Version	1.34.0
License	Artistic-2.0
Depends	R (>= 2.10.0), RColorBrewer, gplots, geneplotter, splots, limma, vcd, LSD, EBImage
Imports
LinkingTo
Suggests	BiocStyle
SystemRequirements	GNU make
Enhances
URL
Depends On Me
Imports Me
Suggests Me	splots
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	HD2013SGI_1.34.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/HD2013SGI
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/HD2013SGI
Package Short Url	https://bioconductor.org/packages/HD2013SGI/
Package Downloads Report	Download Stats