bcellViper

DOI: 10.18129/B9.bioc.bcellViper    

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see bcellViper.

Human B-cell transcriptional interactome and normal human B-cell expression data

Bioconductor version: 3.14

This package provides a human B-cell context-specific transcriptional regulatory network and a human normal B-cells dataset for the examples in package viper.

Author: Mariano Javier Alvarez

Maintainer: Mariano Javier Alvarez <malvarez at c2b2.columbia.edu>

Installation

To install this package, start R (version "4.1") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("bcellViper")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("bcellViper")

 

PDF	R Script	Using bcellViper
PDF		Reference Manual
Text		NEWS

Details

biocViews	CancerData, ExperimentData, Genome, Homo_sapiens_Data
Version	1.30.0
License	GPL (>=2)
Depends	R (>= 2.14.0), Biobase, methods
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me	dorothea
Suggests Me	GenomicSuperSignature, iterClust, pageRank, viper
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	bcellViper_1.30.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/bcellViper
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/bcellViper
Package Short Url	https://bioconductor.org/packages/bcellViper/
Package Downloads Report	Download Stats