easierData

DOI: 10.18129/B9.bioc.easierData    

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see easierData.

easier internal data and exemplary dataset from IMvigor210CoreBiologies package

Bioconductor version: 3.14

Access to internal data required for the functional performance of easier package and exemplary bladder cancer dataset with both processed RNA-seq data and information on response to ICB therapy generated by Mariathasan et al. "TGF-B attenuates tumour response to PD-L1 blockade by contributing to exclusion of T cells", published in Nature, 2018 [doi:10.1038/nature25501](https://doi.org/10.1038/nature25501). The data is made available via [`IMvigor210CoreBiologies`](http://research-pub.gene.com/IMvigor210CoreBiologies/) package under the CC-BY license.

Author: Oscar Lapuente-Santana [aut, cre] , Federico Marini [aut] , Arsenij Ustjanzew [aut] , Francesca Finotello [aut] , Federica Eduati [aut]

Maintainer: Oscar Lapuente-Santana <o.lapuente.santana at tue.nl>

Installation

To install this package, start R (version "4.1") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("easierData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("easierData")

 

HTML	R Script	easier data
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	CancerData, ExperimentData, ExperimentHub, ImmunoOncologyData, RNASeqData, ReproducibleResearch
Version	1.0.0
License	MIT + file LICENSE
Depends	R (>= 4.1.0)
Imports	ExperimentHub, AnnotationHub, utils, SummarizedExperiment
LinkingTo
Suggests	knitr, rmarkdown, BiocStyle, testthat (>= 3.0.0)
SystemRequirements
Enhances
URL
Depends On Me
Imports Me	easier
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	easierData_1.0.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/easierData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/easierData
Package Short Url	https://bioconductor.org/packages/easierData/
Package Downloads Report	Download Stats