tcgaWGBSData.hg19

DOI: 10.18129/B9.bioc.tcgaWGBSData.hg19    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.14 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see tcgaWGBSData.hg19.

Data

Bioconductor version: 3.14

Data package for WGBS Data in TCGA. Data is stored as SummarizedExperiment Format. See vignette on how to extract the data and perform differential methylation analysis.

Author: Divy Kangeyan <divyswar01 at g.harvard.edu>

Maintainer: Divy Kangeyan <divyswar01 at g.harvard.edu>

Installation

To install this package, start R (version "4.1") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("tcgaWGBSData.hg19")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("tcgaWGBSData.hg19")

 

HTML	R Script	Vignette Title
PDF		Reference Manual
Text		NEWS

Details

biocViews	CancerData, ExperimentData, Genome, Homo_sapiens_Data, SequencingData
Version	1.12.0
License	GPL-2
Depends	R (>= 3.5.0), ExperimentHub
Imports	bsseq, knitr
LinkingTo
Suggests
SystemRequirements
Enhances
URL
BugReports	https://github.com/aryeelab/tcgaWGBSData.hg19/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	tcgaWGBSData.hg19_1.12.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/tcgaWGBSData.hg19
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/tcgaWGBSData.hg19
Package Short Url	https://bioconductor.org/packages/tcgaWGBSData.hg19/
Package Downloads Report	Download Stats