tuberculosis

DOI: 10.18129/B9.bioc.tuberculosis    

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see tuberculosis.

Tuberculosis Gene Expression Data for Machine Learning

Bioconductor version: 3.14

The tuberculosis R/Bioconductor package features tuberculosis gene expression data for machine learning. All human samples from GEO that did not come from cell lines, were not taken postmortem, and did not feature recombination have been included. The package has more than 10,000 samples from both microarray and sequencing studies that have been processed from raw data through a hyper-standardized, reproducible pipeline.

Author: Lucas Schiffer [aut, cre]

Maintainer: Lucas Schiffer <schiffer.lucas at gmail.com>

Installation

To install this package, start R (version "4.1") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("tuberculosis")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("tuberculosis")

 

HTML	R Script	tuberculosis
PDF		Reference Manual
Text		NEWS

Details

biocViews	ExperimentData, ExperimentHub, ExpressionData, Homo_sapiens_Data, MicroarrayData, ReproducibleResearch, SequencingData
Version	1.0.0
License	Artistic-2.0
Depends	R (>= 4.1.0), SummarizedExperiment
Imports	AnnotationHub, ExperimentHub, S4Vectors, dplyr, magrittr, purrr, rlang, stringr, tibble, tidyr
LinkingTo
Suggests	BiocStyle, ggplot2, hrbrthemes, knitr, readr, rmarkdown, scater, usethis, utils
SystemRequirements
Enhances
URL	https://github.com/schifferl/tuberculosis
BugReports	https://github.com/schifferl/tuberculosis/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	tuberculosis_1.0.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/tuberculosis
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/tuberculosis
Package Short Url	https://bioconductor.org/packages/tuberculosis/
Package Downloads Report	Download Stats