GCSscore

DOI: 10.18129/B9.bioc.GCSscore  

GCSscore: an R package for microarray analysis for Affymetrix/Thermo Fisher arrays

Bioconductor version: Release (3.16)

For differential expression analysis of 3'IVT and WT-style microarrays from Affymetrix/Thermo-Fisher. Based on S-score algorithm originally described by Zhang et al 2002.

Author: Guy M. Harris & Shahroze Abbas & Michael F. Miles

Maintainer: Guy M. Harris <harrisgm at vcu.edu>

Citation (from within R, enter citation("GCSscore")):

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GCSscore")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GCSscore")

 

PDF R Script SScore primer
PDF   Reference Manual
Text   NEWS

Details

biocViews DataImport, DifferentialExpression, Microarray, OneChannel, ProprietaryPlatforms, Software
Version 1.12.0
In Bioconductor since BioC 3.10 (R-3.6) (3.5 years)
License GPL (>=3)
Depends R (>= 3.6)
Imports BiocManager, Biobase, utils, methods, RSQLite, devtools, dplR, stringr, graphics, stats, affxparser, data.table
LinkingTo
Suggests siggenes, GEOquery, R.utils
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GCSscore_1.12.0.tar.gz
Windows Binary GCSscore_1.12.0.zip (64-bit only)
macOS Binary (x86_64) GCSscore_1.12.0.tgz
macOS Binary (arm64) GCSscore_1.12.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/GCSscore
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GCSscore
Bioc Package Browser https://code.bioconductor.org/browse/GCSscore/
Package Short Url https://bioconductor.org/packages/GCSscore/
Package Downloads Report Download Stats

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