GRENITS

DOI: 10.18129/B9.bioc.GRENITS  

Gene Regulatory Network Inference Using Time Series

Bioconductor version: Release (3.16)

The package offers four network inference statistical models using Dynamic Bayesian Networks and Gibbs Variable Selection: a linear interaction model, two linear interaction models with added experimental noise (Gaussian and Student distributed) for the case where replicates are available and a non-linear interaction model.

Author: Edward Morrissey

Maintainer: Edward Morrissey <edward.morrissey at gmail.com>

Citation (from within R, enter citation("GRENITS")):

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GRENITS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GRENITS")

 

PDF R Script GRENITS
PDF   Reference Manual
Text   NEWS

Details

biocViews Bayesian, GeneExpression, GeneRegulation, GraphAndNetwork, Network, NetworkInference, Software, TimeCourse
Version 1.50.2
In Bioconductor since BioC 2.9 (R-2.14) (11.5 years)
License GPL (>= 2)
Depends R (>= 2.12.0), Rcpp (>= 0.8.6), RcppArmadillo (>= 0.2.8), ggplot2 (>= 0.9.0)
Imports graphics, grDevices, reshape2, stats, utils
LinkingTo Rcpp, RcppArmadillo
Suggests network
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GRENITS_1.50.2.tar.gz
Windows Binary GRENITS_1.50.2.zip
macOS Binary (x86_64) GRENITS_1.50.2.tgz
macOS Binary (arm64) GRENITS_1.50.2.tgz
Source Repository git clone https://git.bioconductor.org/packages/GRENITS
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GRENITS
Bioc Package Browser https://code.bioconductor.org/browse/GRENITS/
Package Short Url https://bioconductor.org/packages/GRENITS/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.16 Source Archive

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: