AffiXcan
A Functional Approach To Impute Genetically Regulated Expression
Bioconductor version: Release (3.20)
Impute a GReX (Genetically Regulated Expression) for a set of genes in a sample of individuals, using a method based on the Total Binding Affinity (TBA). Statistical models to impute GReX can be trained with a training dataset where the real total expression values are known.
Author: Alessandro Lussana [aut, cre]
Maintainer: Alessandro Lussana <alessandro.lussana at protonmail.com>
citation("AffiXcan")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("AffiXcan")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("AffiXcan")| AffiXcan | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DimensionReduction, GeneExpression, GeneRegulation, PrincipalComponent, Regression, Software, Transcription |
| Version | 1.24.0 |
| In Bioconductor since | BioC 3.8 (R-3.5) (6 years) |
| License | GPL-3 |
| Depends | R (>= 3.6), SummarizedExperiment |
| Imports | MultiAssayExperiment, BiocParallel, crayon |
| System Requirements | |
| URL |
See More
| Suggests | BiocStyle, knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | AffiXcan_1.24.0.tar.gz |
| Windows Binary (x86_64) | AffiXcan_1.24.0.zip |
| macOS Binary (x86_64) | AffiXcan_1.24.0.tgz |
| macOS Binary (arm64) | AffiXcan_1.23.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/AffiXcan |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/AffiXcan |
| Bioc Package Browser | https://code.bioconductor.org/browse/AffiXcan/ |
| Package Short Url | https://bioconductor.org/packages/AffiXcan/ |
| Package Downloads Report | Download Stats |