CNTools
Convert segment data into a region by sample matrix to allow for other high level computational analyses.
Bioconductor version: Release (3.20)
This package provides tools to convert the output of segmentation analysis using DNAcopy to a matrix structure with overlapping segments as rows and samples as columns so that other computational analyses can be applied to segmented data
Author: Jianhua Zhang
Maintainer: J. Zhang <jzhang at jimmy.harvard.edu>
Citation (from within R, enter
citation("CNTools")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("CNTools")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CNTools")| NCTools HowTo | R Script | |
| Reference Manual |
Details
| biocViews | CopyNumberVariation, Microarray, Software |
| Version | 1.62.0 |
| In Bioconductor since | BioC 2.5 (R-2.10) (15 years) |
| License | LGPL |
| Depends | R (>= 2.10), methods, tools, stats, genefilter |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | cghMCR |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | CNTools_1.62.0.tar.gz |
| Windows Binary (x86_64) | CNTools_1.62.0.zip (64-bit only) |
| macOS Binary (x86_64) | CNTools_1.62.0.tgz |
| macOS Binary (arm64) | CNTools_1.61.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/CNTools |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/CNTools |
| Bioc Package Browser | https://code.bioconductor.org/browse/CNTools/ |
| Package Short Url | https://bioconductor.org/packages/CNTools/ |
| Package Downloads Report | Download Stats |