Doscheda
A DownStream Chemo-Proteomics Analysis Pipeline
Bioconductor version: Release (3.20)
Doscheda focuses on quantitative chemoproteomics used to determine protein interaction profiles of small molecules from whole cell or tissue lysates using Mass Spectrometry data. The package provides a shiny application to run the pipeline, several visualisations and a downloadable report of an experiment.
Author: Bruno Contrino, Piero Ricchiuto
Maintainer: Bruno Contrino <br1contrino at yahoo.co.uk>
citation("Doscheda")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Doscheda")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Doscheda")
Doscheda | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | DataImport, MassSpectrometry, Normalization, Preprocessing, Proteomics, QualityControl, Regression, Software |
Version | 1.28.0 |
In Bioconductor since | BioC 3.6 (R-3.4) (7 years) |
License | GPL-3 |
Depends | R (>= 3.4) |
Imports | methods, drc, stats, httr, jsonlite, reshape2, vsn, affy, limma, stringr, ggplot2, graphics, grDevices, calibrate, corrgram, gridExtra, DT, shiny, shinydashboard, readxl, prodlim, matrixStats |
System Requirements | |
URL |
See More
Suggests | BiocStyle, knitr, rmarkdown, testthat |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | Doscheda_1.28.0.tar.gz |
Windows Binary (x86_64) | Doscheda_1.28.0.zip |
macOS Binary (x86_64) | Doscheda_1.28.0.tgz |
macOS Binary (arm64) | Doscheda_1.27.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/Doscheda |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Doscheda |
Bioc Package Browser | https://code.bioconductor.org/browse/Doscheda/ |
Package Short Url | https://bioconductor.org/packages/Doscheda/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.20 | Source Archive |