GateFinder
Projection-based Gating Strategy Optimization for Flow and Mass Cytometry
Bioconductor version: Release (3.20)
Given a vector of cluster memberships for a cell population, identifies a sequence of gates (polygon filters on 2D scatter plots) for isolation of that cell type.
Author: Nima Aghaeepour <naghaeep at gmail.com>, Erin F. Simonds <erin.simonds at gmail.com>
Maintainer: Nima Aghaeepour <naghaeep at gmail.com>
Citation (from within R, enter
citation("GateFinder")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GateFinder")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GateFinder")| GateFinder | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | CellBiology, Clustering, FlowCytometry, ImmunoOncology, Software |
| Version | 1.26.0 |
| In Bioconductor since | BioC 3.7 (R-3.5) (6.5 years) |
| License | Artistic-2.0 |
| Depends | |
| Imports | splancs, mvoutlier, methods, stats, diptest, flowCore, flowFP |
| System Requirements | |
| URL |
See More
| Suggests | RUnit, BiocGenerics |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | GateFinder_1.26.0.tar.gz |
| Windows Binary (x86_64) | GateFinder_1.26.0.zip (64-bit only) |
| macOS Binary (x86_64) | GateFinder_1.26.0.tgz |
| macOS Binary (arm64) | GateFinder_1.25.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/GateFinder |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GateFinder |
| Bioc Package Browser | https://code.bioconductor.org/browse/GateFinder/ |
| Package Short Url | https://bioconductor.org/packages/GateFinder/ |
| Package Downloads Report | Download Stats |