Rbwa
R wrapper for BWA-backtrack and BWA-MEM aligners
Bioconductor version: Release (3.20)
Provides an R wrapper for BWA alignment algorithms. Both BWA-backtrack and BWA-MEM are available. Convenience function to build a BWA index from a reference genome is also provided. Currently not supported for Windows machines.
Author: Jean-Philippe Fortin [aut, cre]
Maintainer: Jean-Philippe Fortin <fortin946 at gmail.com>
Citation (from within R, enter
citation("Rbwa")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Rbwa")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Rbwa")| An introduction to Rbwa | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | Alignment, Sequencing, Software |
| Version | 1.10.0 |
| In Bioconductor since | BioC 3.15 (R-4.2) (2.5 years) |
| License | MIT + file LICENSE |
| Depends | R (>= 4.1) |
| Imports | |
| System Requirements | GNU make |
| URL | https://github.com/Jfortin1/Rbwa |
| Bug Reports | https://github.com/crisprVerse/Rbwa/issues |
See More
| Suggests | testthat, BiocStyle, knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | crisprBwa |
| Suggests Me | crisprDesign |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | Rbwa_1.10.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | Rbwa_1.10.0.tgz |
| macOS Binary (arm64) | Rbwa_1.9.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/Rbwa |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Rbwa |
| Bioc Package Browser | https://code.bioconductor.org/browse/Rbwa/ |
| Package Short Url | https://bioconductor.org/packages/Rbwa/ |
| Package Downloads Report | Download Stats |