ReUseData
Reusable and reproducible Data Management
Bioconductor version: Release (3.20)
ReUseData is an _R/Bioconductor_ software tool to provide a systematic and versatile approach for standardized and reproducible data management. ReUseData facilitates transformation of shell or other ad hoc scripts for data preprocessing into workflow-based data recipes. Evaluation of data recipes generate curated data files in their generic formats (e.g., VCF, bed). Both recipes and data are cached using database infrastructure for easy data management and reuse. Prebuilt data recipes are available through ReUseData portal ("https://rcwl.org/dataRecipes/") with full annotation and user instructions. Pregenerated data are available through ReUseData cloud bucket that is directly downloadable through "getCloudData()".
Author: Qian Liu [aut, cre] 
Maintainer: Qian Liu <qian.liu at roswellpark.org>
citation("ReUseData")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ReUseData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ReUseData")| ReUseDataData | HTML | R Script |
| ReUseDataQS | HTML | R Script |
| ReUseDataRecipes | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataImport, ImmunoOncology, Infrastructure, Preprocessing, Software |
| Version | 1.6.0 |
| In Bioconductor since | BioC 3.17 (R-4.3) (1.5 years) |
| License | GPL-3 |
| Depends | |
| Imports | Rcwl, RcwlPipelines, BiocFileCache, S4Vectors, stats, tools, utils, methods, jsonlite, yaml, basilisk |
| System Requirements | |
| URL | https://github.com/rworkflow/ReUseData |
| Bug Reports | https://github.com/rworkflow/ReUseData/issues |
See More
| Suggests | knitr, rmarkdown, testthat (>= 3.0.0), BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ReUseData_1.6.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | ReUseData_1.6.0.tgz |
| macOS Binary (arm64) | ReUseData_1.5.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ReUseData |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ReUseData |
| Bioc Package Browser | https://code.bioconductor.org/browse/ReUseData/ |
| Package Short Url | https://bioconductor.org/packages/ReUseData/ |
| Package Downloads Report | Download Stats |