S4Arrays
Foundation of array-like containers in Bioconductor
Bioconductor version: Release (3.20)
The S4Arrays package defines the Array virtual class to be extended by other S4 classes that wish to implement a container with an array-like semantic. It also provides: (1) low-level functionality meant to help the developer of such container to implement basic operations like display, subsetting, or coercion of their array-like objects to an ordinary matrix or array, and (2) a framework that facilitates block processing of array-like objects (typically on-disk objects).
Author: Hervé Pagès [aut, cre], Jacques Serizay [ctb]
Maintainer: Hervé Pagès <hpages.on.github at gmail.com>
citation("S4Arrays")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("S4Arrays")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("S4Arrays")| A quick overview of the S4Arrays package | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataRepresentation, Infrastructure, Software |
| Version | 1.6.0 |
| In Bioconductor since | BioC 3.17 (R-4.3) (1.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 4.3.0), methods, Matrix, abind, BiocGenerics(>= 0.45.2), S4Vectors, IRanges |
| Imports | stats, crayon |
| System Requirements | |
| URL | https://bioconductor.org/packages/S4Arrays |
| Bug Reports | https://github.com/Bioconductor/S4Arrays/issues |
See More
| Suggests | BiocParallel, SparseArray(>= 0.0.4), DelayedArray, testthat, knitr, rmarkdown, BiocStyle |
| Linking To | S4Vectors |
| Enhances | |
| Depends On Me | DelayedArray, SparseArray |
| Imports Me | alabaster.matrix, DelayedTensor, HDF5Array, scran, scuttle, SummarizedExperiment |
| Suggests Me | BiocGenerics |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | S4Arrays_1.6.0.tar.gz |
| Windows Binary (x86_64) | S4Arrays_1.6.0.zip (64-bit only) |
| macOS Binary (x86_64) | S4Arrays_1.6.0.tgz |
| macOS Binary (arm64) | S4Arrays_1.5.11.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/S4Arrays |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/S4Arrays |
| Bioc Package Browser | https://code.bioconductor.org/browse/S4Arrays/ |
| Package Short Url | https://bioconductor.org/packages/S4Arrays/ |
| Package Downloads Report | Download Stats |