TargetSearch
A package for the analysis of GC-MS metabolite profiling data
Bioconductor version: Release (3.20)
This packages provides a flexible, fast and accurate method for targeted pre-processing of GC-MS data. The user provides a (often very large) set of GC chromatograms and a metabolite library of targets. The package will automatically search those targets in the chromatograms resulting in a data matrix that can be used for further data analysis.
Author: Alvaro Cuadros-Inostroza [aut, cre], Jan Lisec [aut], Henning Redestig [aut], Matt Hannah [aut]
Maintainer: Alvaro Cuadros-Inostroza <acuadros+bioc at gmail.com>
citation("TargetSearch")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("TargetSearch")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TargetSearch")| RI correction extra | R Script | |
| The TargetSearch Package | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DecisionTree, ImmunoOncology, MassSpectrometry, Preprocessing, Software |
| Version | 2.8.0 |
| In Bioconductor since | BioC 2.4 (R-2.9) (15.5 years) |
| License | GPL (>= 2) |
| Depends | |
| Imports | graphics, grDevices, methods, ncdf4, stats, utils, assertthat |
| System Requirements | |
| URL | https://github.com/acinostroza/TargetSearch |
| Bug Reports | https://github.com/acinostroza/TargetSearch/issues |
See More
| Suggests | TargetSearchData, BiocStyle, knitr, tinytest |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | TargetSearch_2.8.0.tar.gz |
| Windows Binary (x86_64) | TargetSearch_2.8.0.zip (64-bit only) |
| macOS Binary (x86_64) | TargetSearch_2.8.0.tgz |
| macOS Binary (arm64) | TargetSearch_2.7.2.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/TargetSearch |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/TargetSearch |
| Bioc Package Browser | https://code.bioconductor.org/browse/TargetSearch/ |
| Package Short Url | https://bioconductor.org/packages/TargetSearch/ |
| Package Downloads Report | Download Stats |