Menu

XDE

XDE: a Bayesian hierarchical model for cross-study analysis of differential gene expression


Bioconductor version: Release (3.20)

Multi-level model for cross-study detection of differential gene expression.

Author: R.B. Scharpf, G. Parmigiani, A.B. Nobel, and H. Tjelmeland

Maintainer: Robert Scharpf <rscharpf at jhsph.edu>

Citation (from within R, enter citation("XDE")):

Installation

To install this package, start R (version "4.4") and enter: 


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("XDE")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("XDE")
XDE Vignette PDF R Script
XdeParameterClass Vignette PDF R Script
Reference Manual PDF
NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DifferentialExpression, Microarray, Software
Version 2.52.0
In Bioconductor since BioC 2.2 (R-2.7) (16.5 years)
License LGPL-2
Depends R (>= 2.10.0), Biobase(>= 2.5.5)
Imports BiocGenerics, genefilter, graphics, grDevices, gtools, methods, stats, utils, mvtnorm, RColorBrewer, GeneMeta, siggenes
System Requirements
URL
See More
Suggests MASS, RUnit
Linking To
Enhances coda
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package XDE_2.52.0.tar.gz
Windows Binary (x86_64) XDE_2.52.0.zip
macOS Binary (x86_64) XDE_2.52.0.tgz
macOS Binary (arm64) XDE_2.51.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/XDE
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/XDE
Bioc Package Browser https://code.bioconductor.org/browse/XDE/
Package Short Url https://bioconductor.org/packages/XDE/
Package Downloads Report Download Stats