beachmat
Compiling Bioconductor to Handle Each Matrix Type
Bioconductor version: Release (3.20)
Provides a consistent C++ class interface for reading from a variety of commonly used matrix types. Ordinary matrices and several sparse/dense Matrix classes are directly supported, along with a subset of the delayed operations implemented in the DelayedArray package. All other matrix-like objects are supported by calling back into R.
Author: Aaron Lun [aut, cre], Hervé Pagès [aut], Mike Smith [aut]
Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>
citation("beachmat")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("beachmat")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("beachmat")| Developer guide | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataImport, DataRepresentation, Infrastructure, Software |
| Version | 2.22.0 |
| In Bioconductor since | BioC 3.6 (R-3.4) (7 years) |
| License | GPL-3 |
| Depends | |
| Imports | methods, DelayedArray(>= 0.27.2), SparseArray, BiocGenerics, Matrix, Rcpp |
| System Requirements | C++17 |
| URL | https://github.com/tatami-inc/beachmat |
| Bug Reports | https://github.com/tatami-inc/beachmat/issues |
See More
| Suggests | testthat, BiocStyle, knitr, rmarkdown, rcmdcheck, BiocParallel, HDF5Array, beachmat.hdf5 |
| Linking To | Rcpp, assorthead |
| Enhances | |
| Depends On Me | |
| Imports Me | batchelor, beachmat.hdf5, BiocSingular, DropletUtils, epiregulon, mumosa, scater, scran, scrapper, scuttle, SingleR |
| Suggests Me | bsseq, glmGamPoi, mbkmeans, PCAtools, scCB2 |
| Links To Me | beachmat.hdf5, BiocSingular, bsseq, DropletUtils, epiregulon, glmGamPoi, mbkmeans, PCAtools, scran, scrapper, scuttle, SingleR |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | beachmat_2.22.0.tar.gz |
| Windows Binary (x86_64) | beachmat_2.22.0.zip (64-bit only) |
| macOS Binary (x86_64) | beachmat_2.22.0.tgz |
| macOS Binary (arm64) | beachmat_2.21.9.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/beachmat |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/beachmat |
| Bioc Package Browser | https://code.bioconductor.org/browse/beachmat/ |
| Package Short Url | https://bioconductor.org/packages/beachmat/ |
| Package Downloads Report | Download Stats |