heatmaps
Flexible Heatmaps for Functional Genomics and Sequence Features
Bioconductor version: Release (3.20)
This package provides functions for plotting heatmaps of genome-wide data across genomic intervals, such as ChIP-seq signals at peaks or across promoters. Many functions are also provided for investigating sequence features.
Author: Malcolm Perry <mgperry32 at gmail.com>
Maintainer: Malcolm Perry <mgperry32 at gmail.com>
Citation (from within R, enter
citation("heatmaps")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("heatmaps")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("heatmaps")| Vignette Title | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | FunctionalGenomics, SequenceMatching, Software, Visualization |
| Version | 1.30.0 |
| In Bioconductor since | BioC 3.5 (R-3.4) (7.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.5.0) |
| Imports | methods, grDevices, graphics, stats, Biostrings, GenomicRanges, IRanges, KernSmooth, plotrix, Matrix, EBImage, RColorBrewer, BiocGenerics, GenomeInfoDb |
| System Requirements | |
| URL |
See More
| Suggests | BSgenome.Drerio.UCSC.danRer7, knitr, rmarkdown, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | heatmaps_1.30.0.tar.gz |
| Windows Binary (x86_64) | heatmaps_1.30.0.zip (64-bit only) |
| macOS Binary (x86_64) | heatmaps_1.30.0.tgz |
| macOS Binary (arm64) | heatmaps_1.29.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/heatmaps |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/heatmaps |
| Bioc Package Browser | https://code.bioconductor.org/browse/heatmaps/ |
| Package Short Url | https://bioconductor.org/packages/heatmaps/ |
| Package Downloads Report | Download Stats |