optimalFlow

Bioconductor version: Release (3.20)

Optimal-transport techniques applied to supervised flow cytometry gating.

Author: Hristo Inouzhe <hristo.inouzhe at gmail.com>

Maintainer: Hristo Inouzhe <hristo.inouzhe at gmail.com>

Citation (from within R, enter citation("optimalFlow")):

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("optimalFlow")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("optimalFlow")

optimalFlow: optimal-transport approach to Flow Cytometry analysis	HTML	R Script
Reference Manual	PDF

biocViews	FlowCytometry, Software, Technology
Version	1.18.0
In Bioconductor since	BioC 3.11 (R-4.0) (4.5 years)
License	Artistic-2.0
Depends	dplyr, optimalFlowData, rlang (>= 0.4.0)
Imports	transport, parallel, Rfast, robustbase, dbscan, randomForest, foreach, graphics, doParallel, stats, flowMeans, rgl, ellipse
System Requirements
URL

Suggests	knitr, BiocStyle, rmarkdown, magick
Linking To
Enhances
Depends On Me
Imports Me
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Build Report	Build Report

Follow Installation instructions to use this package in your R session.

Source Package	optimalFlow_1.18.0.tar.gz
Windows Binary (x86_64)	optimalFlow_1.18.0.zip
macOS Binary (x86_64)	optimalFlow_1.18.0.tgz
macOS Binary (arm64)	optimalFlow_1.17.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/optimalFlow
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/optimalFlow
Bioc Package Browser	https://code.bioconductor.org/browse/optimalFlow/
Package Short Url	https://bioconductor.org/packages/optimalFlow/
Package Downloads Report	Download Stats