pandaR
PANDA Algorithm
Bioconductor version: Release (3.20)
Runs PANDA, an algorithm for discovering novel network structure by combining information from multiple complementary data sources.
Author: Dan Schlauch, Joseph N. Paulson, Albert Young, John Quackenbush, Kimberly Glass
Maintainer: Joseph N. Paulson <paulson.joseph at gene.com>, Dan Schlauch <dschlauch at genospace.com>
Citation (from within R, enter
citation("pandaR")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("pandaR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("pandaR")| pandaR Package | HTML | R Script |
| Reference Manual |
Details
| biocViews | GeneExpression, GeneRegulation, GraphAndNetwork, Microarray, Network, NetworkInference, Software, StatisticalMethod, Transcription |
| Version | 1.38.0 |
| In Bioconductor since | BioC 3.1 (R-3.2) (9.5 years) |
| License | GPL-2 |
| Depends | R (>= 3.0.0), methods, Biobase, BiocGenerics |
| Imports | matrixStats, igraph, ggplot2, grid, reshape, plyr, RUnit, hexbin |
| System Requirements | |
| URL |
See More
| Suggests | knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | netZooR |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | pandaR_1.38.0.tar.gz |
| Windows Binary (x86_64) | pandaR_1.38.0.zip |
| macOS Binary (x86_64) | pandaR_1.38.0.tgz |
| macOS Binary (arm64) | pandaR_1.37.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/pandaR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/pandaR |
| Bioc Package Browser | https://code.bioconductor.org/browse/pandaR/ |
| Package Short Url | https://bioconductor.org/packages/pandaR/ |
| Package Downloads Report | Download Stats |