qPLEXanalyzer

Tools for quantitative proteomics data analysis

Installation

To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("qPLEXanalyzer")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("qPLEXanalyzer")

qPLEXanalyzer	HTML	R Script
Reference Manual	PDF
NEWS	Text

Details

biocViews	DataImport, ImmunoOncology, MassSpectrometry, Normalization, Preprocessing, Proteomics, QualityControl, Software
Version	1.24.0
In Bioconductor since	BioC 3.8 (R-3.5) (6 years)
License	GPL-2
Depends	R (>= 4.0), Biobase, MSnbase
Imports	assertthat, BiocGenerics, Biostrings, dplyr (>= 1.0.0), ggdendro, ggplot2, graphics, grDevices, IRanges, limma, magrittr, preprocessCore, purrr, RColorBrewer, readr, rlang, scales, stats, stringr, tibble, tidyr, tidyselect, utils
System Requirements
URL
Bug Reports	https://github.com/crukci-bioinformatics/qPLEXanalyzer/issues

See More

Suggests	patchwork, knitr, qPLEXdata, rmarkdown, statmod, testthat, UniProt.ws, vdiffr
Linking To
Enhances
Depends On Me	qPLEXdata
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	qPLEXanalyzer_1.24.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)	qPLEXanalyzer_1.23.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/qPLEXanalyzer
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/qPLEXanalyzer
Bioc Package Browser	https://code.bioconductor.org/browse/qPLEXanalyzer/
Package Short Url	https://bioconductor.org/packages/qPLEXanalyzer/
Package Downloads Report	Download Stats