spatialSimGP

Simulate Spatial Transcriptomics Data with the Mean-variance Relationship

Bioconductor version: Release (3.20)

This packages simulates spatial transcriptomics data with the mean- variance relationship using a Gaussian Process model per gene.

Author: Kinnary Shah [aut, cre] , Boyi Guo [aut] , Stephanie C. Hicks [aut]

Maintainer: Kinnary Shah <kinnaryshahh at gmail.com>

Citation (from within R, enter citation("spatialSimGP")):

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("spatialSimGP")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("spatialSimGP")

biocViews	GeneExpression, Software, Spatial, Transcriptomics
Version	1.0.0
In Bioconductor since	BioC 3.20 (R-4.4) (< 6 months)
License	MIT + file LICENSE
Depends	R (>= 4.4)
Imports	SpatialExperiment, MASS, SummarizedExperiment
System Requirements
URL	https://github.com/kinnaryshah/spatialSimGP
Bug Reports	https://github.com/kinnaryshah/spatialSimGP/issues

Suggests	testthat (>= 3.0.0), STexampleData, ggplot2, knitr
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Build Report	Build Report

Follow Installation instructions to use this package in your R session.

Source Package	spatialSimGP_1.0.0.tar.gz
Windows Binary (x86_64)	spatialSimGP_1.0.0.zip (64-bit only)
macOS Binary (x86_64)	spatialSimGP_1.0.0.tgz
macOS Binary (arm64)	spatialSimGP_0.99.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/spatialSimGP
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/spatialSimGP
Bioc Package Browser	https://code.bioconductor.org/browse/spatialSimGP/
Package Short Url	https://bioconductor.org/packages/spatialSimGP/
Package Downloads Report	Download Stats