AHLRBaseDbs
LRBaseDbs for AnnotationHub
Bioconductor version: Release (3.20)
Supplies AnnotationHub with `LRbaseDb` Ligand-Receptor annotation databases for many species. All the SQLite files are generated by our Snakemake workflow [lrbase-workflow](https://github.com/rikenbit/lrbase-workflow). For the details, see the README.md of lrbase-workflow.
Author: Koki Tsuyuzaki [aut, cre], Manabu Ishii [aut], Itoshi Nikaido [aut]
Maintainer: Koki Tsuyuzaki <k.t.the-answer at hotmail.co.jp>
citation("AHLRBaseDbs")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("AHLRBaseDbs")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("AHLRBaseDbs")| Provide LRBaseDb databases for AnnotationHub | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | AnnotationData, AnnotationHub, FunctionalAnnotation, LRBaseDb |
| Version | 1.8.0 |
| License | Artistic-2.0 |
| Depends | R (>= 4.1.0) |
| Imports | AnnotationHub(>= 2.22.0) |
| System Requirements | |
| URL | |
| Bug Reports | https://github.com/rikenbit/AHLRBaseDbs/issues |
See More
| Suggests | BiocStyle, knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | AHLRBaseDbs_1.8.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Package Short Url | https://bioconductor.org/packages/AHLRBaseDbs/ |
| Package Downloads Report | Download Stats |