BSgenome.Hsapiens.UCSC.hg17.masked

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

Full masked genome sequences for Homo sapiens (UCSC version hg17)

Bioconductor version: Release (3.20)

Full genome sequences for Homo sapiens (Human) as provided by UCSC (hg17, May 2004) and stored in Biostrings objects. The sequences are the same as in BSgenome.Hsapiens.UCSC.hg17, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default.

Author: The Bioconductor Dev Team

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("BSgenome.Hsapiens.UCSC.hg17.masked")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BSgenome.Hsapiens.UCSC.hg17.masked")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation


Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	AnnotationData, BSgenome, Genetics, Homo_sapiens
Version	1.3.999
License	Artistic-2.0
Depends	BSgenome(>= 1.31.8), BSgenome.Hsapiens.UCSC.hg17
Imports	BSgenome, BSgenome.Hsapiens.UCSC.hg17
System Requirements
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	BSgenome.Hsapiens.UCSC.hg17.masked_1.3.999.tar.gz
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Package Short Url	https://bioconductor.org/packages/BSgenome.Hsapiens.UCSC.hg17.masked/
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