TxDb.Hsapiens.UCSC.hg38.knownGene
Annotation package for TxDb object(s)
Bioconductor version: Release (3.20)
Exposes an annotation databases generated from UCSC by exposing these as TxDb objects
Author: Bioconductor Core Team, Bioconductor Package Maintainer <maintainer at bioconductor.org> [cre]
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
Citation (from within R, enter
citation("TxDb.Hsapiens.UCSC.hg38.knownGene")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("TxDb.Hsapiens.UCSC.hg38.knownGene")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | AnnotationData, Genetics, Homo_sapiens, TxDb |
| Version | 3.20.0 |
| License | Artistic-2.0 |
| Depends | GenomicFeatures |
| Imports | AnnotationDbi |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | annotation |
| Imports Me | DNAfusion, DegCre, OutSplice, epimutacions, gINTomics, musicatk, nearBynding, rGREAT, strandCheckR, uncoverappLib, cinaR, driveR |
| Suggests Me | BSgenome, BUSpaRse, ChIPpeakAnno, EpiCompare, EpiTxDb, GRaNIE, GenVisR, GenomicDataCommons, GenomicFeatures, GenomicRanges, GenomicScores, NanoMethViz, Organism.dplyr, SARC, Ularcirc, annotatr, bambu, enhancerHomologSearch, gDNAx, geneAttribution, hicVennDiagram, mosdef, podkat, raer, scmeth, spatzie, wiggleplotr, chipenrich.data, xcoredata |
| Links To Me |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | TxDb.Hsapiens.UCSC.hg38.knownGene_3.20.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Package Short Url | https://bioconductor.org/packages/TxDb.Hsapiens.UCSC.hg38.knownGene/ |
| Package Downloads Report | Download Stats |