synaptome.db
Synamptosome Proteome Database
Bioconductor version: Release (3.20)
The package contains local copy of the Synaptic proteome database. On top of this it provide a set of utility R functions to query and analyse its content. It allows extraction of information for specific genes and building the protein-protein interaction graph for gene sets, synaptic compartments, and brain regions.
Author: Anatoly Sorokin [aut], Oksana Sorokina [aut, cre], J. Douglas Armstrong [aut]
Maintainer: Oksana Sorokina <oksana.sorokina at ed.ac.uk>
citation("synaptome.db")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("synaptome.db")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("synaptome.db")
synaptome_db_query | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | AnnotationData, AnnotationHub, CustomDBSchema, FunctionalAnnotation |
Version | 0.99.16 |
License | Artistic-2.0 |
Depends | R (>= 3.5.0), synaptome.data |
Imports | DBI, RSQLite, dplyr, dbplyr, igraph, Rdpack, AnnotationHub, utils |
System Requirements | |
URL | |
Bug Reports | https://github.com/lptolik/synaptome.db/issues/ |
See More
Suggests | rmarkdown, knitr, pander, testthat, devtools, markdown, ggplot2 |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | synaptome.db_0.99.16.tar.gz |
Windows Binary (x86_64) | |
macOS Binary (x86_64) | |
macOS Binary (arm64) | |
Package Short Url | https://bioconductor.org/packages/synaptome.db/ |
Package Downloads Report | Download Stats |