HiContactsData
HiContacts companion data package
Bioconductor version: Release (3.20)
Provides a collection of Hi-C files (pairs, (m)cool and fastq). These datasets can be read into R and further investigated and visualized with the HiContacts package. Data includes yeast Hi-C data generated by the Koszul lab from the Pasteur Institute.
Author: Jacques Serizay [aut, cre]
Maintainer: Jacques Serizay <jacquesserizay at gmail.com>
Citation (from within R, enter
citation("HiContactsData")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("HiContactsData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("HiContactsData")| HiContactsData | HTML | R Script |
| Reference Manual | ||
| LICENSE | Text |
Details
| biocViews | ExperimentData, ExperimentHub, SequencingData |
| Version | 1.8.0 |
| License | MIT + file LICENSE |
| Depends | ExperimentHub |
| Imports | BiocFileCache, AnnotationHub |
| System Requirements | |
| URL | https://github.com/js2264/HiContactsData |
| Bug Reports | https://github.com/js2264/HiContactsData/issues |
See More
| Suggests | testthat, methods, BiocStyle, knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | OHCA |
| Suggests Me | HiCExperiment, HiContacts, HiCool, plyinteractions |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | HiContactsData_1.8.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/HiContactsData |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/HiContactsData |
| Package Short Url | https://bioconductor.org/packages/HiContactsData/ |
| Package Downloads Report | Download Stats |