MMDiffBamSubset
Example ChIP-Seq data for the MMDiff package
Bioconductor version: Release (3.20)
Subset of BAM files, including WT_2.bam, Null_2.bam, Resc_2.bam, Input.bam from the "Cfp1" experiment (see Clouaire et al., Genes Dev. 2012). Data is available under ArrayExpress accession numbers E-ERAD-79. Additionally, corresponding subset of peaks called by MACS
Author: Gabriele Schweikert
Maintainer: Gabriele Schweikert <G.Schweikert at ed.ac.uk>
Citation (from within R, enter
citation("MMDiffBamSubset")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MMDiffBamSubset")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
Reference Manual |
Details
biocViews | ArrayExpress, ChIPSeqData, DNASeqData, ExperimentData, Genome, Mus_musculus_Data, StemCell |
Version | 1.42.0 |
License | LGPL |
Depends | |
Imports | |
System Requirements | |
URL |
See More
Suggests | MMDiff2 |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | MMDiff2 |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | MMDiffBamSubset_1.42.0.tar.gz |
Windows Binary (x86_64) | |
macOS Binary (x86_64) | |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/MMDiffBamSubset |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MMDiffBamSubset |
Package Short Url | https://bioconductor.org/packages/MMDiffBamSubset/ |
Package Downloads Report | Download Stats |