RNAseqData.HNRNPC.bam.chr14

Aligned reads from RNAseq experiment: Transcription profiling by high throughput sequencing of HNRNPC knockdown and control HeLa cells

Bioconductor version: Release (3.20)

The package contains 8 BAM files, 1 per sequencing run. Each BAM file was obtained by (1) aligning the reads (paired-end) to the full hg19 genome with TopHat2, and then (2) subsetting to keep only alignments on chr14. See accession number E-MTAB-1147 in the ArrayExpress database for details about the experiment, including links to the published study (by Zarnack et al., 2012) and to the FASTQ files.

Author: Hervé Pagès

Maintainer: Hervé Pagès <hpages.on.github at gmail.com>

Citation (from within R, enter citation("RNAseqData.HNRNPC.bam.chr14")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RNAseqData.HNRNPC.bam.chr14")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation


Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ArrayExpress, ExperimentData, GEO, Genome, Homo_sapiens_Data, NCI, RNASeqData, SequencingData
Version	0.44.0
License	LGPL
Depends
Imports
System Requirements
URL	http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1147/

Suggests	GenomicAlignments, BiocManager
Linking To
Enhances
Depends On Me	sequencing
Imports Me
Suggests Me	BiocParallel, GenomicAlignments, GenomicFiles, GenomicRanges, Rsamtools, SplicingGraphs, roar
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	RNAseqData.HNRNPC.bam.chr14_0.44.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/RNAseqData.HNRNPC.bam.chr14
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/RNAseqData.HNRNPC.bam.chr14
Package Short Url	https://bioconductor.org/packages/RNAseqData.HNRNPC.bam.chr14/
Package Downloads Report	Download Stats