SFEData
Example SpatialFeatureExperiment datasets
Bioconductor version: Release (3.20)
Example spatial transcriptomics datasets with Simple Feature annotations as SpatialFeatureExperiment objects. Technologies include Visium, slide-seq, Nanostring CoxMX, Vizgen MERFISH, and 10X Xenium. Tissues include mouse skeletal muscle, human melanoma metastasis, human lung, breast cancer, and mouse liver.
Author: Lambda Moses [aut, cre] 
, Alik Huseynov [aut] , Kayla Jackson [aut] , Lior Pachter [aut, ths]
Maintainer: Lambda Moses <dlu2 at caltech.edu>
citation("SFEData")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("SFEData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("SFEData")| Example SpatialFeatureExperiment datasets | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | ExperimentData, ExperimentHub, ExpressionData, Homo_sapiens_Data, Mus_musculus_Data, SingleCellData, SpatialData, Tissue |
| Version | 1.8.0 |
| License | Artistic-2.0 |
| Depends | |
| Imports | BiocFileCache, AnnotationHub, ExperimentHub, utils |
| System Requirements | |
| URL | https://github.com/pachterlab/SFEData |
| Bug Reports | https://github.com/pachterlab/SFEData/issues |
See More
| Suggests | BiocStyle, knitr, rmarkdown, SeuratObject, SpatialFeatureExperiment, testthat (>= 3.0.0) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | SpatialFeatureExperiment, concordexR, xenLite |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | SFEData_1.8.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/SFEData |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/SFEData |
| Package Short Url | https://bioconductor.org/packages/SFEData/ |
| Package Downloads Report | Download Stats |