octad.db

Open Cancer TherApeutic Discovery (OCTAD) database


Bioconductor version: Release (3.20)

Open Cancer TherApeutic Discovery (OCTAD) package implies sRGES approach for the drug discovery. The essential idea is to identify drugs that reverse the gene expression signature of a disease by tamping down over-expressed genes and stimulating weakly expressed ones. The following package contains all required precomputed data for whole OCTAD pipeline computation.

Author: E. Chekalin [aut, cre], S. Paithankar [aut], B. Zeng [aut], B. Glicksberg [ctb], P. Newbury [ctb], J. Xing [ctb], K. Liu [ctb], A. Wen [ctb], D. Joseph [ctb], B. Chen [aut]

Maintainer: E. Chekalin <eygen.chekalin at gmail.com>

Citation (from within R, enter citation("octad.db")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("octad.db")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("octad.db")
octad.db HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews CancerData, ExperimentData, ExperimentHub, ExpressionData, SequencingData
Version 1.8.0
License Artistic-2.0
Depends R (>= 4.2.0), ExperimentHub
Imports
System Requirements
URL
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Suggests knitr, rmarkdown
Linking To
Enhances
Depends On Me octad
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package octad.db_1.8.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/octad.db
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/octad.db
Package Short Url https://bioconductor.org/packages/octad.db/
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