To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("AneuFinder")
In most cases, you don't need to download the package archive at all.
This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see AneuFinder.
Bioconductor version: 3.3
This package implements functions for CNV calling, plotting, export and analysis from whole-genome single cell sequencing data.
Author: Aaron Taudt, Bjorn Bakker, David Porubsky
Maintainer: Aaron Taudt <aaron.taudt at gmail.com>
Citation (from within R,
enter citation("AneuFinder")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("AneuFinder")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("AneuFinder")
R Script | A quick introduction to AneuFinder | |
Reference Manual | ||
Text | NEWS |
biocViews | CopyNumberVariation, GenomicVariation, HiddenMarkovModel, Software, WholeGenome |
Version | 1.0.3 |
In Bioconductor since | BioC 3.3 (R-3.3) (< 6 months) |
License | Artistic-2.0 |
Depends | R (>= 3.3.0), GenomicRanges, cowplot, AneuFinderData |
Imports | utils, grDevices, graphics, stats, foreach, doParallel, BiocGenerics, S4Vectors, GenomeInfoDb, IRanges, Rsamtools, Biostrings, GenomicAlignments, preseqR, ggplot2, reshape2, ggdendro, ReorderCluster, mclust |
LinkingTo | |
Suggests | knitr, testthat, BSgenome.Hsapiens.UCSC.hg19, BSgenome.Mmusculus.UCSC.mm10 |
SystemRequirements | |
Enhances | |
URL | https://github.com/ataudt/aneufinder.git |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | AneuFinder_1.0.3.tar.gz |
Windows Binary | AneuFinder_1.0.3.zip (32- & 64-bit) |
Mac OS X 10.9 (Mavericks) | AneuFinder_1.0.3.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/AneuFinder/tree/release-3.3 |
Package Short Url | http://bioconductor.org/packages/AneuFinder/ |
Package Downloads Report | Download Stats |
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