To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("ELMER")
In most cases, you don't need to download the package archive at all.
This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see ELMER.
Bioconductor version: 3.3
ELMER is designed to use DNA methylation and gene expression from a large number of samples to infere regulatory element landscape and transcription factor network in primary tissue.
Author: Lijing Yao [cre, aut], Ben Berman [aut], Peggy Farnham [aut], Hui Shen [ctb], Peter Laird [ctb], Simon Coetzee [ctb]
Maintainer: Lijing Yao <lijingya at usc.edu>
Citation (from within R,
enter citation("ELMER")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("ELMER")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ELMER")
R Script | ELMER: Inferring Regulatory Element Landscapes and Transcription Factor Networks Using Methylomes | |
Reference Manual |
biocViews | DNAMethylation, GeneExpression, GeneRegulation, MotifAnnotation, Software |
Version | 1.4.2 |
In Bioconductor since | BioC 3.2 (R-3.2) (1 year) |
License | GPL-3 |
Depends | R (>= 3.2.0), IlluminaHumanMethylation450kanno.ilmn12.hg19, Homo.sapiens, ELMER.data |
Imports | methods, BiocGenerics, S4Vectors, IRanges, GenomeInfoDb, GenomicRanges, ggplot2, reshape, grid, gridExtra, minfi, GenomicFeatures |
LinkingTo | |
Suggests | parallel, snow, BiocStyle, knitr, R.utils, downloader |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | ELMER_1.4.2.tar.gz |
Windows Binary | ELMER_1.4.2.zip |
Mac OS X 10.9 (Mavericks) | ELMER_1.4.2.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/ELMER/tree/release-3.3 |
Package Short Url | http://bioconductor.org/packages/ELMER/ |
Package Downloads Report | Download Stats |
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