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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ExpressionAtlas")
In most cases, you don't need to download the package archive at all.
ExpressionAtlas
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This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see ExpressionAtlas.
Download datasets from EMBL-EBI Expression Atlas
Bioconductor version: 3.3
This package is for searching for datasets in EMBL-EBI Expression Atlas, and downloading them into R for further analysis. Each Expression Atlas dataset is represented as a SimpleList object with one element per platform. Sequencing data is contained in a SummarizedExperiment object, while microarray data is contained in an ExpressionSet or MAList object.
Author: Maria Keays
Maintainer: Maria Keays <mkeays at ebi.ac.uk>
Citation (from within R,
enter citation("ExpressionAtlas")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ExpressionAtlas")
Documentation
| HTML | R Script | ExpressionAtlas |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | ArrayExpress, ExperimentData, ExpressionData, MicroarrayData, SequencingData, Software |
| Version | 1.0.3 |
| In Bioconductor since | BioC 3.3 (R-3.3) (< 6 months) |
| License | GPL (>= 3) |
| Depends | R (>= 3.2.0), methods, Biobase, SummarizedExperiment, limma, S4Vectors, xml2 |
| Imports | utils, XML, httr |
| LinkingTo | |
| Suggests | knitr, testthat, rmarkdown |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | ExpressionAtlas_1.0.3.tar.gz |
| Windows Binary | ExpressionAtlas_1.0.3.zip |
| Mac OS X 10.9 (Mavericks) | ExpressionAtlas_1.0.3.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/ExpressionAtlas/tree/release-3.3 |
| Package Short Url | http://bioconductor.org/packages/ExpressionAtlas/ |
| Package Downloads Report | Download Stats |
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