- Home
- Bioconductor 3.3
- Software Packages
- GenRank
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GenRank")
In most cases, you don't need to download the package archive at all.
GenRank
|
This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see GenRank.
Candidate gene prioritization based on convergent evidence
Bioconductor version: 3.3
Methods for ranking genes based on convergent evidence obtained from multiple independent evidence layers. This package adapts three methods that are popular for meta-analysis.
Author: Chakravarthi Kanduri
Maintainer: Chakravarthi Kanduri <chakra.kanduri at gmail.com>
Citation (from within R,
enter citation("GenRank")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GenRank")
Documentation
| HTML | R Script | Introduction to GenRank Package |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | CopyNumberVariation, GeneExpression, Genetics, Microarray, SNP, Sequencing, Software |
| Version | 1.0.2 |
| In Bioconductor since | BioC 3.3 (R-3.3) (< 6 months) |
| License | Artistic-2.0 |
| Depends | R (>= 3.2.3) |
| Imports | matrixStats, reshape2, survcomp |
| LinkingTo | |
| Suggests | knitr, rmarkdown, testthat |
| SystemRequirements | |
| Enhances | |
| URL | https://github.com/chakri9/GenRank |
| BugReports | https://github.com/chakri9/GenRank/issues |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | GenRank_1.0.2.tar.gz |
| Windows Binary | GenRank_1.0.2.zip |
| Mac OS X 10.9 (Mavericks) | GenRank_1.0.2.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/GenRank/tree/release-3.3 |
| Package Short Url | http://bioconductor.org/packages/GenRank/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
