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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GenVisR")
In most cases, you don't need to download the package archive at all.
GenVisR
|
This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see GenVisR.
Genomic Visualizations in R
Bioconductor version: 3.3
Produce highly customizable publication quality graphics for genomic data primarily at the cohort level.
Author: Zachary Skidmore [aut, cre], Alex Wagner [aut], Robert Lesurf [aut], Katie Campbell [aut], Jason Kunisaki [aut], Obi Griffith [aut], Malachi Griffith [aut]
Maintainer: Zachary Skidmore <zskidmor at genome.wustl.edu>
Citation (from within R,
enter citation("GenVisR")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GenVisR")
Documentation
| HTML | R Script | GenVisR: An introduction |
| HTML | R Script | waterfall: function introduction |
| Reference Manual | ||
| Text | NEWS | |
| Text | LICENSE |
Details
| biocViews | Classification, DNASeq, DataRepresentation, Infrastructure, Software |
| Version | 1.0.4 |
| In Bioconductor since | BioC 3.3 (R-3.3) (< 6 months) |
| License | GPL-3 + file LICENSE |
| Depends | R (>= 3.3.0) |
| Imports | AnnotationDbi, biomaRt, BiocGenerics, Biostrings, DBI, FField, GenomicFeatures, GenomicRanges, ggplot2 (>= 0.9.2), grid, gridExtra, gtable, gtools, IRanges, plyr (>= 1.8.3), reshape2, Rsamtools, scales, stats, utils, viridis |
| LinkingTo | |
| Suggests | BiocStyle, BSgenome.Hsapiens.UCSC.hg19, knitr, RMySQL, roxygen2, testthat, TxDb.Hsapiens.UCSC.hg19.knownGene |
| SystemRequirements | |
| Enhances | |
| URL | |
| BugReports | https://github.com/griffithlab/GenVisR/issues |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | GenVisR_1.0.4.tar.gz |
| Windows Binary | GenVisR_1.0.4.zip |
| Mac OS X 10.9 (Mavericks) | GenVisR_1.0.4.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/GenVisR/tree/release-3.3 |
| Package Short Url | http://bioconductor.org/packages/GenVisR/ |
| Package Downloads Report | Download Stats |
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