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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GenomicFiles")
In most cases, you don't need to download the package archive at all.
GenomicFiles
|
This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see GenomicFiles.
Distributed computing by file or by range
Bioconductor version: 3.3
This package provides infrastructure for parallel computations distributed 'by file' or 'by range'. User defined MAPPER and REDUCER functions provide added flexibility for data combination and manipulation.
Author: Valerie Obenchain, Michael Love, Martin Morgan
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
Citation (from within R,
enter citation("GenomicFiles")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GenomicFiles")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GenomicFiles")
| R Script | Introduction to GenomicFiles | |
| Reference Manual | ||
| Text | NEWS | |
| Video | Reading from a BAM file - Part 2 |
Details
| biocViews | Coverage, DataImport, Genetics, Infrastructure, Sequencing, Software |
| Version | 1.8.0 |
| In Bioconductor since | BioC 2.14 (R-3.1) (2.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.1.0), methods, BiocGenerics(>= 0.11.2), GenomicRanges(>= 1.23.21), SummarizedExperiment, BiocParallel(>= 1.1.0), Rsamtools(>= 1.17.29), rtracklayer(>= 1.25.3) |
| Imports | GenomicAlignments(>= 1.7.7), Biobase, IRanges, S4Vectors(>= 0.9.25), VariantAnnotation, GenomeInfoDb |
| LinkingTo | |
| Suggests | BiocStyle, RUnit, genefilter, deepSNV, RNAseqData.HNRNPC.bam.chr14, Biostrings, Homo.sapiens |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | contiBAIT, derfinder, erma, gQTLBase, gQTLstats, QuasR, Rqc |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | GenomicFiles_1.8.0.tar.gz |
| Windows Binary | GenomicFiles_1.8.0.zip |
| Mac OS X 10.9 (Mavericks) | GenomicFiles_1.8.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/GenomicFiles/tree/release-3.3 |
| Package Short Url | http://bioconductor.org/packages/GenomicFiles/ |
| Package Downloads Report | Download Stats |
Documentation »
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