To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Glimma")
In most cases, you don't need to download the package archive at all.
Glimma
|
This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see Glimma.
Interactive HTML graphics for RNA-seq data
Bioconductor version: 3.3
This package generates interactive visualisations of RNA-sequencing data based on output from limma, edgeR or DESeq2. Interactions are built on top of popular static displays from the limma package, providing users with access to gene IDs and sample information. Plots are generated using d3.js and displayed in HTML pages.
Author: Shian Su, Matthew E. Ritchie
Maintainer: Shian Su <su.s at wehi.edu.au>
Citation (from within R,
enter citation("Glimma")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Glimma")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Glimma")
| R Script | Glimma Vignette | |
| Reference Manual | ||
| Text | NEWS | |
| Text | LICENSE |
Details
| biocViews | DifferentialExpression, RNASeq, ReportWriting, Software, Visualization |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.3 (R-3.3) (< 6 months) |
| License | GPL-3 | file LICENSE |
| Depends | R (>= 3.2.0) |
| Imports | DESeq2, edgeR, grDevices, methods, stats, utils |
| LinkingTo | |
| Suggests | BiocStyle, limma |
| SystemRequirements | |
| Enhances | |
| URL | https://github.com/Shians/Glimma |
| BugReports | https://github.com/Shians/Glimma/issues |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | Glimma_1.0.0.tar.gz |
| Windows Binary | Glimma_1.0.0.zip |
| Mac OS X 10.9 (Mavericks) | Glimma_1.0.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/Glimma/tree/release-3.3 |
| Package Short Url | http://bioconductor.org/packages/Glimma/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
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