To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("MMDiff")
In most cases, you don't need to download the package archive at all.
This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see MMDiff.
Bioconductor version: 3.3
This package detects statistically significant difference between read enrichment profiles in different ChIP-Seq samples. To take advantage of shape differences it uses Kernel methods (Maximum Mean Discrepancy, MMD). WARNING: This package is deprecated, please use MMDiff2 instead.
Author: Gabriele Schweikert
Maintainer: Gabriele Schweikert <G.Schweikert at ed.ac.uk>
Citation (from within R,
enter citation("MMDiff")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("MMDiff")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MMDiff")
R Script | Analysing ChIP-Seq data with the "MMDiff" package | |
Reference Manual |
biocViews | ChIPSeq, MultipleComparison, Software |
Version | 1.12.0 |
In Bioconductor since | BioC 2.12 (R-3.0) (3.5 years) |
License | Artistic-2.0 |
Depends | R (>= 2.14.0), GenomicRanges, parallel, DiffBind, GMD, Rsamtools |
Imports | IRanges, Biobase |
LinkingTo | |
Suggests | MMDiffBamSubset |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | MMDiffBamSubset |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | MMDiff_1.12.0.tar.gz |
Windows Binary | MMDiff_1.12.0.zip |
Mac OS X 10.9 (Mavericks) | MMDiff_1.12.0.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/MMDiff/tree/release-3.3 |
Package Short Url | http://bioconductor.org/packages/MMDiff/ |
Package Downloads Report | Download Stats |
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