To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("OGSA")
In most cases, you don't need to download the package archive at all.
OGSA
|
This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see OGSA.
Outlier Gene Set Analysis
Bioconductor version: 3.3
OGSA provides a global estimate of pathway deregulation in cancer subtypes by integrating the estimates of significance for individual pathway members that have been identified by outlier analysis.
Author: Michael F. Ochs <ochsm at tcnj.edu>
Maintainer: Michael F. Ochs <ochsm at tcnj.edu>
Citation (from within R,
enter citation("OGSA")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("OGSA")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("OGSA")
| R Script | OGSA Users Manual | |
| Reference Manual |
Details
| biocViews | CopyNumberVariation, GeneExpression, Microarray, Software |
| Version | 1.2.0 |
| In Bioconductor since | BioC 3.2 (R-3.2) (1 year) |
| License | GPL (== 2) |
| Depends | R (>= 3.2.0) |
| Imports | gplots (>= 2.8.0), limma(>= 3.18.13), Biobase |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | OGSA_1.2.0.tar.gz |
| Windows Binary | OGSA_1.2.0.zip |
| Mac OS X 10.9 (Mavericks) | OGSA_1.2.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/OGSA/tree/release-3.3 |
| Package Short Url | http://bioconductor.org/packages/OGSA/ |
| Package Downloads Report | Download Stats |
Documentation »
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